Lucky Resistor has build a PWM fan controller using Arduino and DHT22 sesnsors.
The fan controller described on this project page, controls one or more PWM controlled 12V PC fans. It uses the input from two precise DHT22 based temperature sensors. The MCU is an Arduino Uno, which is powered using a 12V power source. On top of the Arduino Uno, there is the Adafruit data logger shield — and on top of that is an Adafruit LCD shield. The software is a simple, custom written PID controller.
PWM Fan controller – [Link]