Vainajala,
I just now noticed that your very high supply voltage will be putting more than 50V on the TL496's output transistors (42V absolute max. rated) when your SMPS has no load!
When paralleling the output transistors, connect their bases together, connect the TL494's output transistors together and use a single base resistor. Also use a single 15 ohm resistor from the bases to the + supply. The emitter resistors may not be important if you don't match the transistors, read on.
Your calculation for the base resistor is close. The voltage across the base resistor is 45V - 1.5V (max. Vbe of MJE2955) - 1.3V (max. saturation V of TL494 outputs = 42.2V.
Therefore the base resistor is 42.2V divided by [9A divided by 25 (min. hFE of MJE2955 at Ic 3A)] = 117 ohms. I don't use the 1.3 correction term because TI also doesn't. Using 120 ohms, its 352mA is within the max. recommended 400mA of the TL494's paralleled outputs. Its power dissipation will be 42.2V X 352mA = 14.9W full-time, or less than 7W using the SMPS's PWM. Note that many power resistors get extremely hot at their power rating (what temp. does nichrome melt?).
If the output current is reduced to 5A and a 4th MJE2955 is used, then the base resistor can be about 270 ohms, with much less power dissipation.
Ante,
A darlington transistor's output transistor cannot have a saturation voltage that is less than its Vbe, which for an MJ2955 could be as high as 2.5V. By itself, its saturation voltage is half that. So a darlington dissipates twice the heat.
The argument about emitter resistors with paralleled transistors continues. In this circuit, they are not necessary since the transistor with the most gain can hog the whole current without damage. Also, as its collector current increases, its gain decreases down to the gain of the least-gain transistor. Also, the least-gain transistor will conduct less current, so its gain will be more. Therefore they will share the current, but not equally.